Jobe's powers and abilities continue to grow, although the treatments also affect his mental stability, and he takes revenge on those who abused him when he was "dumb": Father McKeen is engulfed in flames, a bully named Jake is put into a catatonic state by a mental "lawnmower man" continually mowing his brain, and a lawnmower invention of Jobe's runs down Harold, Peter's abusive father. Jobe uses his telepathic abilities to make the investigating police attribute it all to "bizarre accidents" in front of Dr. Angelo.

Jobe believes his final stage of evolution is to become "pure energy" in the VSI computer mainframe, and from there reach into all the systems of the world. He promises his "birth" will be signaled by every telephone on the planet ringing simultaneously. The Shop sends a team to capture Jobe, but they are ineffective against his abilities and he scatters their molecules. Jobe uses the lab equipment to enter the mainframe computer, abandoning his body to become a wholly virtual being. In the process, his body becomes a wizened husk.

Dr. Angelo remotely infects the VSI computer with a virus that encrypts all of the links to the outside world, trapping Jobe in the mainframe. As Jobe searches for an unencrypted network connection, Dr. Angelo primes bombs to destroy the building. Feeling responsible for what has happened to Jobe, Angelo then joins him in virtual reality to try to reason with him. Jobe overpowers and crucifies him, then continues to search for a network connection. Peter runs into the building; Jobe still cares for him and allows Dr. Angelo to go free in order to rescue Peter. Jobe forces a computer-connected lock to open, allowing Peter and Dr. Angelo to escape. Jobe escapes through a Backdoor as the building is destroyed in multiple explosions.

Back at home with Peter, Dr. Angelo and Peter's mother Carla (who has become a romantic interest) are about to leave when their telephone rings, followed by the noise of a second, and then hundreds, all around the globe.